Added input folders of new modules

fix typos and nomenclature

Macro trade modules

The code should now run. Some namechanges had to be corrected/reversed. These module additions do not affect the results. Further improvements will be commited at a later date.

Refactoring start scripts: adapt coupling scripts, call SLURM directly without the detour via cmd files

This is part of a larger refactoring effort of the remind core. Here, code related to the trade of permits and primary energy carriers is moved from the core to the new module. Some renaming is required. For now only one module realization exists, 'standard', which corresponds exactly to what was in the core before. The results are not effected!

This is part of the larger refactoing of the core.

  - R packages are packages (that are loaded with the library()
    function)
  - REMIND is optimising scenarios, and not simulating anything
  - as this is intended for people newly coming to REMIND, we don't want
    to start out teaching them the wrong terms

move scripts for magicc into the folder core/magicc, delete outdated script performance_test.R, integrate script submit_compare.cmd into multiComparison.R

Refactoring start scripts: adapt coupling scripts (get rid of *.cmd files by creating the SLURM command on the fly)

Refactoring start scripts: - delete start_functions.R because all it's functions have been replaced by new ones
- fix bugs and correct formatting in other files

add to model output tutorial

Changes for validation

Refactoring start scripts: - moved the definition of the slurm strings from  submit() in submit.R to choose_submit() in start.R
- renamed the function choose_submit() to choose_slurmConfig() and moved it to the new file choose_slurmConfig.R

Refactoring: -start scripts (part 5): renamed submit_run(cfg) into submit.R(cfg), deleted conopt files

bugfix 42c16b11: delete rest of use o…

Refactoring: - part 2: restructure start scripts (try to minimize workload for the login node on the cluster when starting a REMIND run by moving code into scripts that are included in the slurm job)

Refactoring: - restructure start scripts (try to minimize workload for the login node on the cluster when starting a REMIND run by moving code into scripts that are included in the slurm job)

Refactoring (cleaning)

Refactoring - delete realization linadjust of module 45_carbonprice, general code cleaning (mainly start_functions.R)

             - remove old_cluster

refactoring - delete old files from core/input/files