modified input test data

inst/extdata/run/lu_1500_2016/errfile_20240119_1609.err → inst/extdata/run/lu_1500_2016/errfile_20240130_1410.err

@@ -2,3 +2,7 @@ WARNING036: 'soilmap' not defined for soil type 'clay (light)'.
 WARNING036: 'map' not defined in '/p/projects/lpjml/input/historical/input_VERSION2/soil.json' for soil type 'clay (light)'.
 WARNING004: First year in '/p/projects/lpjml/input/Grazing/grassland_lsuha_2000-2000.clm'=2000 greater than 1901.
 WARNING024: Last year in livestock density data file=2000 is less than last simulation year 2016, data from last year used.
+slurmstepd: error: *** STEP 28859272.0 ON cs-f14c02b07 CANCELLED AT 2024-01-30T14:11:16 ***
+srun: error: cs-f14c02b07: task 0: Terminated
+srun: Terminating job step 28859272.0
+srun: Force Terminated job step 28859272.0

inst/extdata/run/lu_1500_2016/interc_b.bin.json

+{
+  "sim_name" : "lu_1500_2016",
+  "source" : "LPJmL C Version 5.8.1",
+  "history" : "/p/projects/open/Fabian/LPJmL_versions/LPJmL58//bin/lpjml /p/projects/open/Fabian/runs/metrics_double_cell//configurations/config_lu_1500_2016.json",
+  "variable" : "interc_b",
+  "firstcell" : 47459,
+  "ncell" : 2,
+  "cellsize_lon" : 0.500000,
+  "cellsize_lat" : 0.500000,
+  "nstep" : 12,
+  "timestep" : 1,
+  "nbands" : 1,
+  "descr" : "blue interception",
+  "unit" : "mm/month",
+  "firstyear" : 1500,
+  "lastyear" : 2016,
+  "nyear" : 517,
+  "datatype" : "float",
+  "scalar" : 1.0,
+  "order" : "cellseq",
+  "bigendian" : false,
+  "format" : "raw",
+  "grid" : {"filename" : "grid.bin.json", "format" : "meta"},
+  "ref_area" : {"filename" : "terr_area.bin.json", "format" : "meta"},
+  "filename" : "interc_b.bin"
+}

inst/extdata/run/lu_1500_2016/ndepo_agr.bin.json

+{
+  "sim_name" : "lu_1500_2016",
+  "source" : "LPJmL C Version 5.8.1",
+  "history" : "/p/projects/open/Fabian/LPJmL_versions/LPJmL58//bin/lpjml /p/projects/open/Fabian/runs/metrics_double_cell//configurations/config_lu_1500_2016.json",
+  "variable" : "ndepo_agr",
+  "firstcell" : 47459,
+  "ncell" : 2,
+  "cellsize_lon" : 0.500000,
+  "cellsize_lat" : 0.500000,
+  "nstep" : 1,
+  "timestep" : 1,
+  "nbands" : 1,
+  "descr" : "N input from atmospheric deposition on agricultural stands",
+  "unit" : "gN/m2/yr",
+  "firstyear" : 1500,
+  "lastyear" : 2016,
+  "nyear" : 517,
+  "datatype" : "float",
+  "scalar" : 1.0,
+  "order" : "cellseq",
+  "bigendian" : false,
+  "format" : "raw",
+  "grid" : {"filename" : "grid.bin.json", "format" : "meta"},
+  "ref_area" : {"filename" : "terr_area.bin.json", "format" : "meta"},
+  "filename" : "ndepo_agr.bin"
+}

inst/extdata/run/lu_1500_2016/nfert_agr.bin.json

+{
+  "sim_name" : "lu_1500_2016",
+  "source" : "LPJmL C Version 5.8.1",
+  "history" : "/p/projects/open/Fabian/LPJmL_versions/LPJmL58//bin/lpjml /p/projects/open/Fabian/runs/metrics_double_cell//configurations/config_lu_1500_2016.json",
+  "variable" : "nfert_agr",
+  "firstcell" : 47459,
+  "ncell" : 2,
+  "cellsize_lon" : 0.500000,
+  "cellsize_lat" : 0.500000,
+  "nstep" : 1,
+  "timestep" : 1,
+  "nbands" : 1,
+  "descr" : "N input from fertilizer on agricultural stands",
+  "unit" : "gN/m2/yr",
+  "firstyear" : 1500,
+  "lastyear" : 2016,
+  "nyear" : 517,
+  "datatype" : "float",
+  "scalar" : 1.0,
+  "order" : "cellseq",
+  "bigendian" : false,
+  "format" : "raw",
+  "grid" : {"filename" : "grid.bin.json", "format" : "meta"},
+  "ref_area" : {"filename" : "terr_area.bin.json", "format" : "meta"},
+  "filename" : "nfert_agr.bin"
+}

inst/extdata/run/lu_1500_2016/nmanure_agr.bin.json

+{
+  "sim_name" : "lu_1500_2016",
+  "source" : "LPJmL C Version 5.8.1",
+  "history" : "/p/projects/open/Fabian/LPJmL_versions/LPJmL58//bin/lpjml /p/projects/open/Fabian/runs/metrics_double_cell//configurations/config_lu_1500_2016.json",
+  "variable" : "nmanure_agr",
+  "firstcell" : 47459,
+  "ncell" : 2,
+  "cellsize_lon" : 0.500000,
+  "cellsize_lat" : 0.500000,
+  "nstep" : 1,
+  "timestep" : 1,
+  "nbands" : 1,
+  "descr" : "N input from manure on  agricultural stands",
+  "unit" : "gN/m2/yr",
+  "firstyear" : 1500,
+  "lastyear" : 2016,
+  "nyear" : 517,
+  "datatype" : "float",
+  "scalar" : 1.0,
+  "order" : "cellseq",
+  "bigendian" : false,
+  "format" : "raw",
+  "grid" : {"filename" : "grid.bin.json", "format" : "meta"},
+  "ref_area" : {"filename" : "terr_area.bin.json", "format" : "meta"},
+  "filename" : "nmanure_agr.bin"
+}

inst/extdata/run/lu_1500_2016/prec.bin.json

 {
   "sim_name" : "lu_1500_2016",
-  "source" : "LPJmL C Version 5.7.5",
-  "history" : "/p/projects/open/Fabian/LPJmL_versions/LPJmL57_add_isimip_outputs//bin/lpjml /p/projects/open/Fabian/runs/metrics_double_cell//configurations/config_lu_1500_2016.json",
+  "source" : "LPJmL C Version 5.8.1",
+  "history" : "/p/projects/open/Fabian/LPJmL_versions/LPJmL58//bin/lpjml /p/projects/open/Fabian/runs/metrics_double_cell//configurations/config_lu_1500_2016.json",
   "variable" : "prec",
   "firstcell" : 47459,
   "ncell" : 2,
@@ -20,5 +20,7 @@
   "order" : "cellseq",
   "bigendian" : false,
   "format" : "raw",
+  "grid" : {"filename" : "grid.bin.json", "format" : "meta"},
+  "ref_area" : {"filename" : "terr_area.bin.json", "format" : "meta"},
   "filename" : "prec.bin"
 }

inst/extdata/run/lu_1500_2016/rootmoist.bin.json

 {
   "sim_name" : "lu_1500_2016",
-  "source" : "LPJmL C Version 5.7.5",
-  "history" : "/p/projects/open/Fabian/LPJmL_versions/LPJmL57_add_isimip_outputs//bin/lpjml /p/projects/open/Fabian/runs/metrics_double_cell//configurations/config_lu_1500_2016.json",
+  "source" : "LPJmL C Version 5.8.1",
+  "history" : "/p/projects/open/Fabian/LPJmL_versions/LPJmL58//bin/lpjml /p/projects/open/Fabian/runs/metrics_double_cell//configurations/config_lu_1500_2016.json",
   "variable" : "rootmoist",
   "firstcell" : 47459,
   "ncell" : 2,
@@ -20,5 +20,7 @@
   "order" : "cellseq",
   "bigendian" : false,
   "format" : "raw",
+  "grid" : {"filename" : "grid.bin.json", "format" : "meta"},
+  "ref_area" : {"filename" : "terr_area.bin.json", "format" : "meta"},
   "filename" : "rootmoist.bin"
 }