reportCEScalib was not working when starting it with output.R

Reintroduce writing of git information to log file (latest commit tag, changes relative to the latest commit).

Allow providing additional SLURM parameters via cfg$slurmConfig. Parameters that are later provided interactively via start.R overwrite the cfg values. Closing #139

Plot supplycurves for all years not just one year.

* Enable prepare_and_run.R to restart fixed runs (https://github.com/remindmodel/remind/issues/112)
* Enable start.R to restart non-optimal runs

Change the reference scenario (for calculating the BECCS bound, see previous commit) from input_ref.gdx to the values of the own previous nash iteration.

EDGE-T scenarios update; EDGE-T supports non-fuel divided by model type and differentiated learning.

change version of gdx being used for NDC target calculation (now input_bau.gdx) so that correct NDC targets are also calculated for non-SSP2 pathways

- added documentation to the output script.
- updated the multi-comparison-matrix.
- updated the prefix used for coupled runs.
- correctly handle the number of cores to be used in parallel.

Add .Rprofile to the list of files that are copied into the results folder *before* prepare_and_run is called.