- added documentation to the output script.
- updated the multi-comparison-matrix.
- updated the prefix used for coupled runs.
- correctly handle the number of cores to be used in parallel.

clean-up of SSP-SDP scenario config. Deleted end-of-century budget runs and "plus" runs (extra sustainability settings in non-SDP runs)

fix in scenario config: start year 2025 for SSP1/SSP5/SDP-NDC scenarios, as these should be fixed to SSP2-NDC until 2020

gdx neutral: clean scenarios in scenario_config_coupled_SSPSDP.csv and compareScenarios.R, add start and end time (of the job not of GAMS) to runstatistics.

Set CO2 price that goes to MAgPIE for Base, NDC, NPi to zero beyond 2100 (so far it was zero only until 2100).

Add path_gdx_bau to scenario_config.csv to avoid warning message in start.R: In is.na(isettings$path_gdx_bau) : is.na() applied to non-(list or vector) of type 'NULL'

REMIND-MAgPIE coupling: Since there is no reduction of the CO2 price anymore in MAgPIE also remove it from REMIND.

bugfix 0935e7ee, reintroduced an if/else condition for a bound on biomass and renamed c_1stgen_phaseout into cm_1stgen_phaseout

- testOneRegi runs are useful for fast development iterations ("do these
  changes break the model, or does it still run"), so setting them up
  should be fast as well

- supplying the parameter "--testOneRegi" to start.R will ignore any
  scenario_config file provided and modify the default configuration to
  start a testOneRegi run in the directory output/testOneRegi with no
  output processing
- the old oneRegi.R script and oneRegi.cfg configuration are deleted

- existing output/testOneRegi directories are overwritten

The code should now run. Some namechanges had to be corrected/reversed. These module additions do not affect the results. Further improvements will be commited at a later date.

This is part of a larger refactoring effort of the remind core. Here, code related to the trade of permits and primary energy carriers is moved from the core to the new module. Some renaming is required. For now only one module realization exists, 'standard', which corresponds exactly to what was in the core before. The results are not effected!

This is part of the larger refactoing of the core.

move scripts for magicc into the folder core/magicc, delete outdated script performance_test.R, integrate script submit_compare.cmd into multiComparison.R

Refactoring: -start scripts (part 5): renamed submit_run(cfg) into submit.R(cfg), deleted conopt files

Refactoring: - part 2: restructure start scripts (try to minimize workload for the login node on the cluster when starting a REMIND run by moving code into scripts that are included in the slurm job)

Refactoring: - restructure start scripts (try to minimize workload for the login node on the cluster when starting a REMIND run by moving code into scripts that are included in the slurm job)

Refactoring - delete realization linadjust of module 45_carbonprice, general code cleaning (mainly start_functions.R)