# source global .Rprofile (very important to load user specific settings) # DO NOT EDIT THIS LINE! if(file.exists("~/.Rprofile")) source("~/.Rprofile") # Check if the library folder is currently being updated and if so use lattest snapshot. if (any(grepl("^00LOCK.*", system(paste0("ls ", .libPaths()[1]), intern = TRUE)))) { lock_folders <- grep("^00LOCK.*", system(paste0("ls ", .libPaths()[1]), intern = TRUE), value=TRUE) bad_pacakges <- gsub("^00LOCK-","", lock_folders) snapshot_folder <- "/p/projects/rd3mod/R/libraries/snapshots/" snapshot_dates <- system(paste0("ls ", snapshot_folder), intern = TRUE) lattest_snapshot <- paste0(snapshot_folder, snapshot_dates[length(snapshot_dates)]) # Give user diagnosis cat("\nThe following lock folders were found at", .libPaths()[1],":\n\t", lock_folders,"\n") cat("That means that the ",bad_pacakges,"package(s) is(are) currently being updated.\n") cat("Packages will be loaded from the library's lattest snapshot instead:\n",lattest_snapshot,"\n") cat("(If the lock folder isn't deleted automatically in the next couple of minutes, that means the package failed to update/install and that the folder has to be removed manually!)\n") if(file.exists(lattest_snapshot)) { .libPaths(lattest_snapshot) } } # This profile can be used to link the model to a specified library snapshot # (e.g. if your model version is from an older date and does not work with the # newest libraries anymore) # By default it is not active. Just uncomment the following lines and set the # snapshot path to a path of your choice # Please make also sure that in your config file this .Rprofile file is copied # to the model output folder. Otherwise, the run itself will again use the # default library set! # snapshot <- "/p/projects/rd3mod/R/libraries/snapshots/2020_03_10" # if(file.exists(snapshot)) { # cat("Set libPaths to",snapshot,"\n") # .libPaths(snapshot) # }