From de446c0d5de2f0dabce263d46d2ab9ad97c5ee80 Mon Sep 17 00:00:00 2001
From: Lavinia Baumstark <baumstark@pik-potsdam.de>
Date: Mon, 20 Jan 2020 08:50:06 +0100
Subject: [PATCH] change name of log file from $JOBNAME.out into log.txt to
reactivate rs-command on cluster
---
scripts/start/submit.R | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/scripts/start/submit.R b/scripts/start/submit.R
index c6590db..25d3db7 100644
--- a/scripts/start/submit.R
+++ b/scripts/start/submit.R
@@ -55,7 +55,7 @@ submit <- function(cfg) {
log <- format(Sys.time(), paste0(cfg$title,"-%Y-%H-%M-%S-%OS3.log"))
system("Rscript prepare_and_run.R")
} else {
- system(paste0("sbatch --job-name=",cfg$title," --output=",cfg$title,".out --mail-type=END --comment=REMIND --wrap=\"Rscript prepare_and_run.R \" ",cfg$slurmConfig))
+ system(paste0("sbatch --job-name=",cfg$title," --output=log.txt --mail-type=END --comment=REMIND --wrap=\"Rscript prepare_and_run.R \" ",cfg$slurmConfig))
Sys.sleep(1)
}
--
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