diff --git a/test_data_sets/4C_testing/species.par b/test_data_sets/4C_testing/species.par new file mode 100644 index 0000000000000000000000000000000000000000..6c6fcaf9e8cffc38b599f61e0bb318405fe2c425 --- /dev/null +++ b/test_data_sets/4C_testing/species.par @@ -0,0 +1,237 @@ +! 4C Species Parameter File +! 31.01.17 pl Picea abies: pss 0.05 -->0.022 Longuetaud, F. etal 2006 +! 18.05.16 Su k_opm_fol, k_syn_fol fuer Mistletoe geschaetzt +! 10.03.16 ck Added parasite Mistletoe (Viscum album austriacum) +! 29.06.15 Su Eucalyptus gl. und gr. k_opm_fol, k_syn_fol, k_opm_frt, k_syn_frt +! 10.07.14 pl Douglasie Korrektur pheight1, pheight2 +! 09.07.14 pl Eucalyptus grandis und globulus parametrisiert +! 11.04.13 Su Kiefer: k_opm_fol 0.02 --> 0.05, k_syn_fol 0.5 --> 0.1, +! k_opm_frt 0.035 --> 0.05, k_syn_frt 0.5 --> 0.1 +! 06.11.12 pl Robinie: Anpassung durch Engler: +! 08.03.12 pl Robinie: phrhos= 0.00069, alphac= 0.42 +! 06.04.11 Su Douglasie: k_opm_fol, k_opm_syn, k_opm_frt geaendert +! 02.04.09 Su Picea: k_opm_fol, ..._syn, k_opm_frt, ..._syn geaendert +! 07.11.08 Su neue Struktur (ab Version v1.0) +! 05.11.08 mg hinzufügen von 10 neuen Parametern für Wurzelmodell +! 04.11.08 PL Robinie parametrisiert +! 29.10.08 pl Douglasie Korrektur pheight1, pheight2 +! contains the following data: +! with * marked parameters are sensitive +! +! nspecies number of all species +! nspec_tree number of tree species +! name species name +! Amax maximum age (years) +! yrec stress recovery time (years) +! stol shade tolerance (1-5) +! pfext extinction coefficient +! sigman* root activity rate +! respcoeff respiration coeff. = fraction of gross production respired by the plant +! prg* growth respiration parameter +! prms* maintenance respiration parameters: sapwood, +! prmr fine roots; +! psf* senescence parameters: foliage, +! pss* sapwood, +! psr* fine roots; +! pcnr* N/C ratio of biomass [kg N/ kg C] +! ncon_fol N concentration of folmg / g TM nicht / g C!!? +! ncon_frt N concentration of fine roots [mg/g] +! ncon_crt N concentration of coarse roots [mg/g] +! ncon_tbc N concentration of twigs and branches [mg/g] +! ncon_stem N concentration of stemwood [mg/g] +! reallo_fol reallocation parameter of foliage +! reallo_frt reallocation parameter of fine root +! alphac ratio of coarse wood (twigs, branches, roots) to sapwood +! cr_frac fraction of tbc (twigs, branches, roots) that is coarse roots +! prhos* sapwood density [kg/m³} +! pnus foliage mass to sapwood area ratio [kg/cm**2] (pipe model) +! pha height growth parameter [cm/kg] +! pha_coeff1 height growth parameter coefficient 1 +! pha_coeff2 height growth parameter coefficient 2 +! pha_v1 height growth parameter 1 for non linear foliage height relationship +! pha_v2 height growth parameter 2 for non linear foliage height relationship +! pha_v3 height growth parameter 3 for non linear foliage height relationship +! crown_a parameter for crown radius - DBH relation [m/cm] +! crown_b parameter for crown radius - DBH relation [m] +! crown_c parameter for crown radius - DBH relation [m] +! psla_min* specific one-sided leaf area [m2/kg DW] +! psla_a +! phic* efficiency parameter, different for everg/decid [-] +! pnc N content (to be replaced by plant N model!) +! kco2_25 Michaelis constant of temperature (base 25 °C) [Pa] +! ko2_25 inhibition constant of O2 [kPa] (eqn 20) +! pc_25* CO2/O2 specificity value (base 25 °C) +! q10_kco2 Q10 values (acclimated to 25 °C ???) +! q10_ko2 +! q10_pc* +! pb Rd to Vm ratio +!PItmin PIM: Inhibitor min temp. +!PItopt PIM: Inhibitor opt temp. +!PItmax PIM: Inhibitor max temp. +!PIa PIM: Inhibitor scaling factor +!PPtmin PIM: Promotor min temp. +!PPtopt PIM: Promotor opt temp. +!PPtmax PIM: Promotor max temp. +!PPa PIM: Promotor scaling factor +!PPb PIM: Promotor scaling factor +!CSTbC CSM: chilling base temp. +!CSTbT CSM: base temp. +!CSa CSM: scaling factor +!CSb CSM: scaling factor +!LTbT TSM: base temp. +!LTcrit TSM: critical temperature sum +!Lstart TSM: start day after 1.11. +!Phmodel used pheno model 0: no model, 1: PIM, 2: CSM, 3: TSM +! end_bb leaf shedding/ end of vegetation period +! fpar_mod modifying parameter in canopy_geometry +! ceppot_spec interception capacity parameter +! Nresp slope of photosynthesis response to N-limitation +! regflag flag for regeneration +! seedrate max. seeddling rate /m2 +! seedmass mass of a single seed [g] +! seedsd standard deviation of seed mass [g] +! seeda parameter of allometric relation shoot biomass - foliage bm +! seedb ---------"----------- +! pheight1 parameter of all. relation shoot biomass - height of seedling +! pheight2 ------------------" ----------- +! pheight3 +! pdiam1 parameter of all. relation shoot biomass - diameter at shoot basis +! pdiam2 ----------"----------------- +! pdiam3 ----------"-------------- +! k_opm_fol +! k_syn_fol +! k_opm_stem +! k_syn_stem +! k_opm_tb +! k_syn_tb +! k_opm_frt +! k_syn_frt +! k_opm_crt +! k_syn_crt +! +nspecies 15 +nspec_tree 13 +!*************************************************************************************************************************************************************** +beech 'Fagus sylvatica' +spruce 'Picea abies' +pine 'Pinus sylvestris' +oak 'Quercus robur' +birch 'Betula pendula' +pinec 'Pinus contorta' +pinep 'Pinus ponderosa' +aspen 'Populus tremula' +pineh 'Pinus halepensis' +dougfir 'Pseudotsuga menziesii' +robinia 'Robinia pseudoacacia' +eglobulus 'Eucalyptus globulus' +egrandis 'Eucalyptus grandis' +grveg 'Ground vegetation' +mistletoe 'Viscum alba' +!*************************************************************************************************************************************************************** +name 'beech' 'spruce' 'pine' 'oak' 'birch' 'pinec' 'pinep' 'aspen' 'pineh' 'dougfir' 'robinia' 'eglobulus' 'egrandis' 'grveg' 'mistletoe' +amax 430 930 760 1060 220 600 850 160 250 930 200 50 50 5 30 +yrec 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 +stol 5 4 1 2 1 1 1 2 1 4 2 1 1 4 1 +pfext 0.4 0.6 0.6 0.5 0.54 0.6 0.5 0.872 0.6 0.3 0.46 0.5 0.5 0.5 0.5 +sigman 0.032 0.05 0.03 0.03 1.1 0.03 0.03 0.07508 0.03 0.025 0.176172 0.025 0.75 1 -99 +respcoeff 0.5 0.52 0.52 0.5 0.5 0.71 0.44 0.5 0.52 0.5 0.5 0.53 0.53 0.5 0.5 +prg 0.25 0.25 0.2 0.25 0.25 0.2 0.2 0.25 0.32 0.25 -99 0.25 0.25 0.25 0.25 +prms 0.0035 0.00043 0.00024 0.0035 0.0035 0.000032 0.00024 0.0014 0.00024 -99 -99 0.3 0.3 0.0035 -99 +prmr 0.0133 0.0033 0.007 0.01 0.01 0.00338 0.0007 0.0034 0.007 -99 0.1938 -99 -99 0.01 -99 +psf 1 0.181 0.31 1 1 0.167 0.24 1 0.5 0.2 1 0.33 0.33 1 0.166 +pss 0.026 0.022 0.04 0.05 0.02 0.023 0.05 0.04 0.04 0.05 0.25 0.03 0.03 0.4 -99 +psr 0.65 0.5 0.5 0.5 0.5 0.4 0.8 0.5 1.095 0.75 0.67 1 1 0.75 -99 +pcnr 0.008 0.0052 0.0079 0.008 0.02 0.0079 0.0212 0.008 0.0079 0.00955 0.0502 0.005 0.005 0.2 -99 +ncon_fol 26.01 13.36 13.46 25 25 13.4 10.6 25 13.46 15.22 33.623 12 12 13.4 -99 +ncon_frt 7.15 10.77 7.44 8.94 8.9 7.4 7.44 16 7.44 3.67 23.55 9.6 9.6 7.4 -99 +ncon_crt 3.03 4.14 1.77 3.71 3.7 1.7 1.77 4 1.77 1.62 17.168 9.6 9.6 1.7 -99 +ncon_tbc 4.27 5.24 3.61 6.19 5.4 3.6 3.61 6 3.61 3.62 17.16 3.8 3.8 3.6 -99 +ncon_stem 1.54 1.22 1.09 2.1 1.7 1.1 1.09 0.6 1.09 1.035 15.345 1 1 1.1 -99 +reallo_fol 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.6 0.1 0.1 0.1 0.5 0.5 0.1 0.1 +reallo_frt 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.55 0.55 0.1 -99 +alphac 0.48 0.5 0.46 0.56 0.5 0.24 0.46 0.46 0.5 0.54 0.51 0.22 0.22 0.5 -99 +cr_frac 0.5 0.6 0.6 0.55 0.42 0.5 0.6 0.328 0.1 0.54 0.86 0.52 0.52 0.5 -99 +prhos 0.00065 0.00042 0.000403 0.00056 0.0005365 0.00042 0.000434 0.000402 0.00062 0.000405 0.00078 0.0005 0.0005 -99 -99 +pnus 0.03 0.096 0.05 0.02 0.025 0.046 0.022 0.02 0.043 0.093 0.05 0.04 0.06 0.03 -99 +pha 125 40 190 100 150 190 190 150 190 40 -99 -99 -99 -99 -99 +pha_coeff1 0.5 0.66666 0.66666 0.5 0.5 0.66666 0.66666 1.0823 0.66666 0.66666 -99 -99 -99 -99 -99 +pha_coeff2 0.5 0.33333 0.33333 0.5 0.5 0.33333 0.33333 0.3189 0.33333 0.33333 -99 -99 -99 -99 -99 +pha_v1 1089.3 284.8 206 946.7 900 1100 206 900 210 750 500 840 854 -99 -99 +pha_v2 0.1351 -0.0151 0.03177 0.299 0.38 0.3 0.03177 0.08 0.08 -0.015 0.8541 -0.02973 -0.2 -99 -99 +pha_v3 0.504 0.5039 0.877 0.948 0.9 0.4184 0.877 0.6 0.6 0.35 0.4404 0.291323 0.29277 -99 -99 +crown_a 0.09571 0.06383 0.05213 0.095 0.0896 0.1437 0.05213 0.06 0.074 0.081287 0.0776 0.1249 0.1249 -99 -99 +crown_b 0.57732 0.33567 0.48139 0.5 0.5716 0.1081 0.48139 0.4 0.255 0.355485 0.7368 0.7879 0.7879 -99 -99 +crown_c 15 12 10 15 6 10 10 6 10 5 4 5.9 5.9 -99 -99 +psla_min 12 3.78 4 14 10 7.5 3.1 7.2 4.84 2.82 13.2 15 0.18 20 4.18 +psla_a 12 2.4 1 4.7 20 1.2 1 4.4 1 4.87 19.5 13.52 13.52 20 4.18 +phic 1 0.8 0.9 1 1 0.9 0.9 1 0.9 0.8 1 1 1 1 0.8 +pnc 20 20 20 20 17.9 50 20 24 20 45 33.623 -99 -99 10 -99 +kco2_25 30 30 30 30 30 30 30 30 40.4 30 30 30 30 30 30 +ko2_25 30 30 60 30 30 60 60 60 24.8 30 30 30 30 30 30 +pc_25 3400 2600 3400 3400 3400 3400 3400 3400 3400 2600 3400 3400 3400 3400 3400 +Q10_kco2 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 +Q10_ko2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 1.2 +Q10_pc 0.57 0.57 0.57 0.57 0.57 0.57 0.57 0.57 0.57 0.57 0.57 0.57 0.57 0.57 0.57 +pb 0.01 0.015 0.01 0.01 0.035 0.01 0.01 0.0143 0.0241 0.015 0.01 0.035 0.035 0.01 0.015 +PItmin -10.34 -99 -99 -23.05 -24.96 -99 -99 -10.34 -99 -99 -99 -99 -99 -99 -99 +PItopt -0.89 -99 -99 -0.3 -10 -99 -99 -0.89 -99 -99 -99 -99 -99 -99 -99 +PItmax 18.11 -99 -99 16.91 15.05 -99 -99 18.11 -99 -99 -99 -99 -99 -99 -99 +PIa 0.058326 -99 -99 0.055149 0.030619 -99 -99 0.058326 -99 -99 -99 -99 -99 -99 -99 +PPtmin -10.03 -99 -99 3.46 -7.03 -99 -99 -10.03 -99 -99 -99 -99 -99 -99 -99 +PPtopt 28.61 -99 -99 34.55 21.8 -99 -99 28.61 -99 -99 -99 -99 -99 -99 -99 +PPtmax 44.49 -99 -99 34.55 25.35 -99 -99 44.49 -99 -99 -99 -99 -99 -99 -99 +PPa 0.109494 -99 -99 0.331253 0.064803 -99 -99 0.109494 -99 -99 -99 -99 -99 -99 -99 +PPb 0.039178 -99 -99 0.010379 0.045432 -99 -99 0.039178 -99 -99 -99 -99 -99 -99 -99 +CSTbC 11.03 -99 -99 18.31 18.42 -99 -99 11.03 -99 -99 -99 -99 -99 -99 -99 +CSTbT 6.5 -99 -99 5.58 4.19 -99 -99 6.5 -99 -99 -99 -99 -99 -99 -99 +CSa 3039.76 -99 -99 3451.18 3075.99 -99 -99 3039.76 -99 -99 -99 -99 -99 -99 -99 +CSb -574.49 -99 -99 -631.5 -573.67 -99 -99 -574.49 -99 -99 -99 -99 -99 -99 -99 +LTbT -6.98 -99 -99 0.49 -6.07 -99 -99 -6.98 -99 -99 11.5 -99 -99 -99 -99 +LTcrit 664.88 -99 -99 372.49 672.9 -99 -99 664.88 -99 -99 350.9 -99 -99 -99 -99 +Lstart 70 -99 -99 70 47 -99 -99 70 -99 -99 70 -99 -99 -99 -99 +Phmodel 1 0 0 1 1 0 0 1 0 0 3 -99 -99 0 0 +end_bb 282 366 366 287 278 366 366 282 366 366 282 366 366 302 366 +fpar_mod 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +ceppot_spe 0.6 0.8 0.9 0.5 0.5 0.4 0.4 0.3 0.9 0.8 0.5 0.3 0.3 0.5 0.6 +Nresp 0.0068 0.0068 0.0062 0.0068 0.0068 0.0062 0.0062 0.0068 0.0062 0.0068 0.0068 0.0068 0.0068 0.006 0.0068 +regflag 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +seedrate 1 1 1 1 1 1 1 1 1.5 1 1 1 1 -99 -99 +seedmass 0.225 0.009 0.006 3.8 0.0002 0.005 0.0055 0.00016 0.019 0.01 0.0228 -99 -99 -99 -99 +seedsd 0 0 0.0011268 0 0 0.0011268 0.0011268 0 0.0011268 0 0 -99 -99 -99 -99 +seeda 0.398 0.8524 0.3927 0.2505 0.313 0.2609 0.3927 0.381 0.5044 1.3217 0.778 -99 -99 -99 -99 +seedb 0.947 1.007 0.6786 0.7232 0.8 0.757 0.6786 0.8365 0.6486 1.1288 0.9645 -99 -99 -99 -99 +pheight1 2.388 0.443 2.512 1.6947 4.651 1.5 2.512 0.2829 1.3145 5.7278 0.118272 -99 -99 -99 -99 +pheight2 0.366 0.23 0.357 0.3896 0.3333 0.7236 0.357 0.57 0.3426 0.2443 0.757755 -99 -99 -99 -99 +pheight3 0 0.0134 0 0 0 -99 0 -99 0 -99 -99 -99 -99 -99 -99 +pdiam1 -1.637 -1.658 0 0 0 -99 0 -99 0 -99 -99 -99 -99 0.35 -99 +pdiam2 0.433 0.386 0 0 0 -99 0 -99 0 -99 -99 -99 -99 0.35 -99 +pdiam3 -0.0126 0 0 0 0 -99 0 -99 0 -99 -99 -99 -99 0.3 -99 +k_opm_fol 0.02 0.06 0.05 0.015 0.01 0.005 0.015 0.04 0.002 0.08 0.3 0.5 0.5 0.03 0.01 +k_syn_fol 0.3 0.2 0.1 0.4 0.78 0.6 0.8 0.4 0.5 0.2 0.2 0.01 0.01 0.2 0.5 +k_opm_frt 0.02 0.05 0.05 0.01 0.00106 0.001 0.009 0.03 0.0004 0.05 0.008 0.001 0.001 0.001 -99 +k_syn_frt 0.4 0.1 0.1 0.3 0.3 0.3 0.3 0.4 0.5 0.3 0.3 0.01 0.01 0.3 -99 +k_opm_crt 0.0009 0.0009 0.0009 0.0009 0.0009 0.0009 0.0009 0.0009 0.0009 0.0009 0.0009 0.0009 0.0009 0 -99 +k_syn_crt 0.1 0.1 0 0.1 0.1 0.1 0 0.1 0 0.1 0.1 0.1 0.1 0.1 -99 +k_opm_tb 0.006 0.006 0.006 0.006 0.0009 0.0009 0.0009 0.0009 0.006 0.006 0.0009 0.0009 0.0009 0 -99 +k_syn_tb 0.5 0.8 0.5 0.5 0.8 0.5 0.5 0.5 0.5 0.8 0.8 0.8 0.8 0 -99 +k_opm_stem 0.0025 0.0005 0.0005 0.0005 0.0005 0.0001 0.00055 0.0001 0.0005 0.0005 0.0005 0.0005 0.0005 0 -99 +k_syn_stem 0.1 0.1 0 0.1 0.1 0.1 0 0.1 0 0.1 0.1 0.1 0.1 0 -99 +spec_rl 30 15 15 30 30 15 15 30 15 15 30 30 30 60 -99 +tbase 5 5 5 5 5 5 5 5 5 5 5 5 5 5 -99 +topt 19.4 16.5 16.5 22 16.5 16.5 16.5 16.5 16.5 16.5 16.5 16.5 16.5 16.5 -99 +bdmax_coef 1.55 1.62 1.62 1.55 1.55 1.62 1.62 1.55 1.62 1.62 1.55 1.55 1.55 1.62 -99 +porcrit_co 0.4 0.7 0.7 0.4 0.4 0.7 0.7 0.4 0.7 0.7 0.4 0.4 0.4 0.7 -99 +ph_opt_max 8.25 5.75 5.75 8.25 8.25 5.75 5.75 8.25 5.75 5.75 8.25 8.25 8.25 8.25 -99 +ph_opt_min 4.25 3.75 3.75 4.25 3.75 3.75 3.75 4.25 3.75 3.75 3.75 3.75 3.75 3.5 -99 +ph_max 9.25 7.75 7.75 9.25 9.25 7.75 7.75 9.25 7.75 7.75 9.25 9.25 9.25 9.25 -99 +ph_min 3.75 2.25 2.25 3.75 2.25 2.25 2.25 3.75 2.25 2.25 2.25 2.25 2.25 2 -99 +v_growth 1 1 1 1 1 1 1 1 1 1 1 1 1 5 -99 + + + +nur_Info: +cnr_fol 25 22 25 25 25 25 25 -99 -99 25 +cnr_frt 25 20 25 22 22 25 25 -99 -99 25 +cnr_crt 25 20 25 22 22 25 25 -99 -99 25 +cnr_tbc 125 63 100 63 63 100 100 -99 -99 25 +cnr_stem 250 190 250 130 130 250 250 -99 -99 25