remove 'save' flag & save-to-disk util functions

distributions.py

@@ -6,7 +6,7 @@ A few functions to assist in estimating the cumulative distributions
 
 """
 # Created: Thu May 26, 2016  11:12PM
-# Last modified: Tue Aug 15, 2017  01:28pm
+# Last modified: Tue Jan 09, 2018  02:02PM
 # Copyright: Bedartha Goswami <goswami@pik-potsdam.de>
 
 
@@ -18,7 +18,7 @@ from utils import _progressbar_update
 from utils import _progressbar_finish
 
 
-def cumulative(pdfmat, var_span, verbose, save, pbar):
+def cumulative(pdfmat, var_span, verbose, pbar):
     """
     Estimates the cumulative distributions for the specified dataset.
     """

events.py

@@ -6,7 +6,7 @@ A suite of functions that assist in carrying out the event-detection analysis
 
 """
 # Created: Thu May 26, 2016  03:50PM
-# Last modified: Tue Jan 09, 2018  01:53PM
+# Last modified: Tue Jan 09, 2018  02:03PM
 # Copyright: Bedartha Goswami <goswami@pik-potsdam.de>
 
 import numpy as np
@@ -72,8 +72,8 @@ def __divide_at_midpoint(G):
     return G1, G2
 
 
-def community_strength_data(G, time, ld, wsize, wstep,
-                            verbose=False, save=True, pbar=False):
+def community_strength_data(G, time, ld, wsize, wstep, 
+                            verbose=False, pbar=False):
     """
     Saves intra-community link fraction for specified data set.
     """
@@ -100,7 +100,7 @@ def community_strength_data(G, time, ld, wsize, wstep,
 
 
 def community_strength_random_model(G, time, ld, wsize, wstep, nsurr,
-                                    verbose=False, save=True, pbar=False):
+                                    verbose=False, pbar=False):
     """
     Saves intra-community link fraction for surrogates of specified data set.
     """
@@ -142,7 +142,7 @@ def community_strength_random_model(G, time, ld, wsize, wstep, nsurr,
     return Qsurr, LDsurr, tmid
 
 
-def pvalues(Q, Qsurr, nwind, verbose=False, save=True, pbar=False):
+def pvalues(Q, Qsurr, nwind, verbose=False, pbar=False):
     """
     Returns the p-value of obtaining intra-community link density.
     """

utils.py

@@ -6,7 +6,7 @@ A suite of utility functions that assist in carrying out the analysis
 
 """
 # Created: Thu May 26, 2016  03:50PM
-# Last modified: Fri Jun 03, 2016  12:55AM
+# Last modified: Tue Jan 09, 2018  02:01PM
 # Copyright: Bedartha Goswami <goswami@pik-potsdam.de>
 
 from progressbar import ProgressBar, Bar, Percentage, ETA
@@ -14,48 +14,6 @@ import matplotlib.pyplot as pl
 import numpy as np
 
 
-def _savedat(path, filename, verbose=False, save=False, **kwargs):
-    """
-    Saves the data in kwargs in filename under given path.
-    """
-    if save:
-        _printmsg("Saving output...", verbose)
-        f = path + filename
-        locals().update(kwargs)
-        var_list = ["%s=%s, " % (key, key) for key in kwargs]
-        var_list = "".join(var_list)
-        save_cmd = "np.savez('%s', %s)" % (f, var_list)
-        exec(save_cmd)
-        _printmsg("Saved to: %s.npz" % f, verbose)
-    return None
-
-
-def _savefig(path, filename, verbose=False, save=False):
-    """
-    Saves the data in kwargs in filename under given path.
-    """
-    if save:
-        _printmsg("Saving figure...", verbose)
-        f = path + filename
-        pl.savefig(f)
-        _printmsg("Saved to: %s" % f, verbose)
-    else:
-        pl.show()
-    return None
-
-
-def _savegraph(path, filename, G, verbose=False, save=False):
-    """
-    Saves igraph Graph object in filename under given path.
-    """
-    if save:
-        _printmsg("Saving igraph Graph...", verbose)
-        f = path + filename
-        G.write_pickle(f)
-        _printmsg("Saved to: %s" % f, verbose)
-    return None
-
-
 def _printmsg(msg, verbose):
     """
     Prints given message according to specified varbosity level.